LinearSankoff Web Server (beta)
LinearFold
LinearPartition
LinearSampling
LinearTurboFold
LinearSankoff
Interactive demo
Add a sequence
Paste
or
type
your sequence here (length < 100,000):
>seq1 GUUCCCGUCUAUUGCAAGACACCAGUUACUGAAUGUGUUCUGUUGGAAAGAGAACAUAUUGAAGUAAUAAUGAACUGCAAAC >seq2 GCUGUCUGGCGCGGGCGGGAGUCGUCCUUGGUGGCCUUCCGUAGGGGAGGCUUCCGGGUCGUUGAAUGCGGCGUACCGCUUC
Arguments
λ
(weight on alignment, 0.0 - 1.0):
Beam Size
(LinearSankoff, 1 - 100):
Beam Size
(LinearFold, 1 - 100):
Maximum Energy Difference from MFE
(0 - 1):
Beam Size
(LinearAlignment, 1 - 100):
Alignment Band Width
(0-100, 0 uses posterior probabilistic alignment region):
Domain Insertion