LinearSankoff Web Server (beta)
LinearFold
   
LinearPartition
   
LinearSampling
   
LinearTurboFold
   
LinearSankoff
Interactive demo
Add a sequence
Paste
or
type
your sequence here (length < 100,000):
>seq1 GUUCCCGUCUAUUGCAAGACACCAGUUACUGAAUGUGUUCUGUUGGAAAGAGAACAUAUUGAAGUAAUAAUGAACUGCAAAC >seq2 GCUGUCUGGCGCGGGCGGGAGUCGUCCUUGGUGGCCUUCCGUAGGGGAGGCUUCCGGGUCGUUGAAUGCGGCGUACCGCUUC
Arguments
λ
(weight on alignment, 0.0 - 1.0):     
Beam Size
(LinearSankoff, 1 - 100):     
Beam Size
(LinearFold, 1 - 100):     
Maximum Energy Difference from MFE
(0 - 1):     
Beam Size
(LinearAlignment, 1 - 100):     
Alignment Band Width
(0-100, 0 uses posterior probabilistic alignment region):     
Domain Insertion