Interactive demo

Add a pair of sequences Paste or type your pair of sequences here (length < 100,000):


Please cite the following paper:

Sizhen Li, Ning Dai, He Zhang, Apoorv Malik, David H. Mathews, and Liang Huang. LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs.

GitHub Repository:

Web Demo implemented by: Apoorv Malik (