LinearPartition Web Server (beta)
LinearFold
LinearPartition
LinearSampling
LinearTurboFold
Interactive demo
Add a sequence
Paste
or
type
your sequence here (length < 100,000):
>name GCUCUGUUGGUGUAGUCCGGCCAAUCAUAUCACCCUCU
Samples
▼
sample1: tRNA_tdbR00000566-Homo_sapiens-9606-Tyr-9PA (len:76)
sample2: SRP_Oryz.sati._AC079888 (len:311)
sample3: 16S rRNA_A.pyrophilus (len:1564)
sample4: 23S rRNA_T.thermophilus (len:2915)
Or
upload
a file in FASTA format:
Choose File
No file chosen...
Available model(s)
LinearPartition-C
(using
CONTRAfold v2.0
machine-learned model, Do et al 2006)
LinearPartition-V
(using
Vienna RNAfold
thermodynamic model, Lorenz et al 2011, with parameters from Mathews et al 2004)
Please cite the following paper:
He Zhang, Liang Zhang, David H. Mathews and Liang Huang(2019).
LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
.
arXiv Preprint
Code:
github
Some Other RNA Secondary Structure Prediction Web Servers
RNAfold
(Vienna)
RNAstructure
(Rochester)
CONTRAfold
(Stanford)
Mfold
(Albany)
CentroidFold
(JBIC)