LinearX Webserver (Beta)

Interactive demo

Add a sequence Paste or type your sequence here (length < 100,000):

Or upload a file in FASTA format

Available model(s)

LinearPartition-C (using CONTRAfold v2.0 machine-learned model, Do et al 2006)

LinearPartition-V (using Vienna RNAfold thermodynamic model, Lorenz et al 2011, with parameters from Mathews et al 2004)

Please cite the following paper: He Zhang, Liang Zhang, David H. Mathews and Liang Huang(2019). LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities. arXiv Preprint

Code: GitHub (implemented by He Zhang, and Liang Huang)

Web Demo designed by Kaibo Liu (liukaib@oregonstate.edu) & Apoorv Malik (malikap@oregonstate.edu)