LinearX
LinearFold
LinearPartition
LinearSampling
LinearTurboFold
LinearSankoff
LinearAliFold
Motifs
Interactive demo
Add a pair of sequences
Paste
or
type
your pair of sequences here (MSA length < 100,000):
>seq1 cucacaacguuugugccucaguuacccguagauguagu >seq2 ucgacaccacu---gccucgguuacccaucggugcagu
Samples
Sample 1 (MSA length: n=38, MSA depth: k=2)
Sample 2 (MSA length: n=93, MSA depth: k=20)
Sample 3 (MSA length: n=123, MSA depth: k=30)
Sample 4 (MSA length: n=1577, MSA depth: k=30)
Or
upload
a file in FASTA format
Arguments
Beam Size
(LinearAliFold: 1 - 1000)
Select Energy Model
BL* parameter (Andronescu et al., 2010)
Vienna RNAfold model (Mathews et al., 2004)
BL* parameter (Andronescu et al., 2010)
Select Mode
Threshknot
MFE (Minimum Free Energy)
MEA (Maximum Expected Accuracy)
Threshknot
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Web Demo implemented by: Apoorv Malik
(malikap@oregonstate.edu)
Some Other RNA Secondary Structure Prediction Web Servers
RNAfold
(Vienna)
RNAstructure
(Rochester)
CONTRAfold
(Stanford)
Mfold
(Albany)
CentroidFold
(JBIC)