LinearX
LinearFold
LinearPartition
LinearSampling
LinearTurboFold
LinearSankoff
LinearAliFold
Motifs
Interactive demo
Add a sequence
Paste
or
type
your sequence here (length < 100,000):
name GCUCUGUUGGUGUAGUCCGGCCAAUCAUAUCACCCUCU
Samples
Sample1 (len: 76)
Sample2 (len: 311)
Sample3 (len: 1564)
Sample4 (len: 2915)
Or
upload
a file in FASTA format
Arguments
Beam size
(1-200):
Sample size
(1-1000):
Available model
LinearSampling-V
(using
Vienna RNAfold
thermodynamic model, Lorenz et al 2011, with parameters from Mathews et al 2004)
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Some Other RNA Secondary Structure Prediction Web Servers
RNAfold
(Vienna)
RNAstructure
(Rochester)
CONTRAfold
(Stanford)
Mfold
(Albany)
CentroidFold
(JBIC)