LinearFold Web Server (beta)
LinearFold     LinearPartition    LinearSampling1    LinearTurboFold LinearSankoff


Interactive demo
Add a sequence Paste or type your sequence here (length < 100,000):
sample1: tRNA_tdbR00000566-Homo_sapiens-9606-Tyr-9PA (len:76) sample2: SRP_Oryz.sati._AC079888 (len:311) sample3: 16S rRNA_A.pyrophilus (len:1564) sample4: 23S rRNA_T.thermophilus (len:2915)

Or upload a file in FASTA format:
Choose File
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Set beam size Beam size (1-200):

Available model

     


LinearPartition

Interactive demos for LinearPartition (using Vienna RNAfold thermodynamic model, Lorenz et al 2011, with parameters from Mathews et al 2004)



Please cite the following paper:

* Liang Huang, **He Zhang, **Dezhong Deng, Kai Zhao, Kaibo Liu, David Hendrix, and David H. Mathews (2019). LinearFold: Linear-Time Approximate RNA Folding by 5’-to-3’ Dynamic Programming and Beam Search. Bioinformatics, Volume 35, Issue 14, July 2019, Pages i295–i304. ISMB 2019
*Corresponding Author, **Equal Contribution.

Code: github


Some Other RNA Secondary Structure Prediction Web Servers
RNAfold (Vienna)   RNAstructure (Rochester)   CONTRAfold (Stanford)   Mfold (Albany)   CentroidFold (JBIC)