LinearX Webserver (Beta)

Interactive demo

Add a sequence Paste or type your sequence here (length < 100,000):

Or upload a file in FASTA format

Available model(s) LinearPartition-C (using CONTRAfold v2.0 machine-learned model, Do et al 2006)
LinearPartition-V (using Vienna RNAfold thermodynamic model, Lorenz et al 2011, with parameters from Mathews et al 2004)

Please cite the following paper:

He Zhang, Liang Zhang, David H. Mathews and Liang Huang(2019). LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities. arXiv Preprint

Code: github