LinearFold Web Server (beta)




Interactive demo
Add a sequence Paste or type your sequence here (length < 100,000):

Or upload a file in FASTA format:
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Set beam size Beam size (1-200):

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Preset demo

Example demos for 16S rRNA/23S rRNA/Group I Intron are available, compared with CONTRAfold v2.0 and Vienna RNAfold algorithms.


Software implemented by Kai Zhao, Dezhong Deng, He Zhang, and Liang Huang from a Linear-time Prediction algorithm*, code available on github.
* Liang Huang, **He Zhang, **Dezhong Deng, Kai Zhao, Kaibo Liu, David Hendrix, and David H. Mathews (2018). Linear-Time Prediction of RNA Secondary Structures.
*Corresponding Author, **Equal Contribution.

Web Demo designed by Kaibo Liu (liukaib_AT_oregonstate.edu)




Some Other RNA Secondary Structure Prediction Web Servers
RNAfold (Vienna)   RNAstructure (Rochester)   CONTRAfold (Stanford)   Mfold (Albany)   CentroidFold (JBIC)